Installing Epitome

Note: Epitome is configured for tensorflow 2/Cuda 9. If you have a different version of cuda, update tensorflow-gpu version accordingly.

Requirements

• conda

• python 3.7

• tensorflow 2.3.0

Installing Tensorflow

In order to run Epitome as efficiently as possible, you should install tensorflow from source. If you have not installed tensorflow prior to installing Epitome, Epitome will install tensorflow from pip, which will not be optimized for your hardware.

Installation from Pip

1. Create and activate a pytion 3.7 conda venv:

conda create --name EpitomeEnv python=3.7
source activate EpitomeEnv

2. Install Epitome from Pypi:

pip install epitome

Installation from Source

1. Create and activate a pytion 3.7 conda venv:

conda create --name EpitomeEnv python=3.7
source activate EpitomeEnv

2. Get Epitome code:

git clone https://github.com/YosefLab/epitome.git
cd epitome

3. Install Epitome and its requirements

pip install -e .