epitome.functions.get_radius_indices

epitome.functions.get_radius_indices(radii, r, i, max_index)

Gets indices for a given radius r in both directions from index i. Used in generator code to get indices in data for a given radius from genomic loci i.

Parameters

• radii (list) – increasing list of integers indiciating radii

• r (int) – Index of which radii

• i (int) – center index to access data

• max_index (int) – max index which can be accessed

Returns

exclusive indices for this radius

Return type

numpy.array