epitome
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Installation and Configuration

  • Installing Epitome
  • Creating an Epitome Dataset

Usage and Examples

  • Creating an Epitome Dataset
  • Training an Epitome Model
  • Predicting peaks for ChIP-seq targets
  • Configuring data
  • API Documentation
epitome
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Index

_ | B | C | D | E | G | H | I | J | L | P | R

_

  • __init__() (epitome.constants.Dataset method)
    • (epitome.conversion.RegionConversion method)
    • (epitome.dataset.EpitomeDataset method)
    • (epitome.models.EpitomeModel method)
    • (epitome.models.PeakModel method)

B

  • bed2Pyranges() (in module epitome.functions)

C

  • calibration_plot() (in module epitome.viz)

D

  • Dataset (class in epitome.constants)
  • download_and_unzip() (in module epitome.functions)

E

  • epitome (module)
  • epitome.constants (module)
  • epitome.conversion (module)
  • epitome.dataset (module)
  • epitome.functions (module)
  • epitome.generators (module)
  • epitome.models (module)
  • epitome.viz (module)
  • EpitomeDataset (class in epitome.dataset)
  • EpitomeModel (class in epitome.models)

G

  • generator_to_tf_dataset() (in module epitome.generators)
  • get_radius_indices() (in module epitome.functions)

H

  • heatmap_aggreement_from_model_weights() (in module epitome.viz)

I

  • indices_for_weighted_resample() (in module epitome.functions)

J

  • joint_plot() (in module epitome.viz)

L

  • load_data() (in module epitome.generators)

P

  • PeakModel (class in epitome.models)
  • plot_assay_heatmap() (in module epitome.viz)

R

  • RegionConversion (class in epitome.conversion)

© Copyright 2019, Alyssa Morrow Revision 429cf74a.

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